PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LSD
Protein Properties Length: 184aa    MW: 19833.5 Da    PI: 4.6305
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108198.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.31.1e-1292116125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL YP+G+  V+C++C+tV
  XP_010108198.1  92 CGSCRRLLKYPPGSQQVQCSCCQTV 116
                     ************************9 PP

2zf-LSD1437.4e-14130154125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+GA+ V+C++C++V
  XP_010108198.1 130 CGSCNVLLMYPYGASQVKCSCCQFV 154
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.0E-1689119IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-992116IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-12127155IPR005735Zinc finger, LSD1-type
PfamPF069437.9E-11130154IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MELESKAKEE VEVEVKVEEV EEDEGPPPGY QTILPPLQPP SPPPPQPSSS PPKEAPEPML  60
TPSTDSTPTL TPTHTPTPTP KSTLSEIAQI VCGSCRRLLK YPPGSQQVQC SCCQTVNFVL  120
EAHQVGQVKC GSCNVLLMYP YGASQVKCSC CQFVTEIGAH NQRPPWSAQQ GQPLPALNPF  180
QSTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108198.11e-129hypothetical protein L484_014524
TrEMBLW9SNB31e-129W9SNB3_9R
STRINGVIT_00s0181g00230.t014e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-32lsd one like 2